PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.E00946.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family NF-YB
Protein Properties Length: 235aa    MW: 25718.8 Da    PI: 4.7377
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.E00946.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB121.82.9e-3860152294
             NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                       r+ d+++Pian++rim++vlP++a i++dake +qe vsefisfvt+ea+ +c+ + r+t++++d+l ++a+lG++dy+epl ++l+k+r  +
  Migut.E00946.1.p  60 RDVDQYMPIANITRIMRRVLPSHAEIADDAKEAIQEYVSEFISFVTAEANWRCHCDYRRTVTPEDVLATMASLGLDDYLEPLILFLNKHRAEQ 152
                       788**************************************************************************************9754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-3655156IPR009072Histone-fold
SuperFamilySSF471132.27E-2863156IPR009072Histone-fold
PfamPF008088.3E-1965127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-1193111No hitNo description
PRINTSPR006152.4E-11112130No hitNo description
PRINTSPR006152.4E-11131149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEKGGCSNIE YKYTTRARTS GIVIREGGVA SAAASTNATN VPAAAPNTIG GQVNQQGFKR  60
DVDQYMPIAN ITRIMRRVLP SHAEIADDAK EAIQEYVSEF ISFVTAEANW RCHCDYRRTV  120
TPEDVLATMA SLGLDDYLEP LILFLNKHRA EQNSEQFVRQ GGDAGVRVGF IDNQQPPMAS  180
TVGYYVPLPP CAATMEEERD FGDLTPAIHE YILRNHGCGE GSSGGCEFDP FQKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-3060149392NF-YB
4csr_A2e-3060149493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B2e-3060149493NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012839441.11e-142PREDICTED: nuclear transcription factor Y subunit B-3-like
TrEMBLA0A022R5831e-160A0A022R583_ERYGU; Uncharacterized protein (Fragment)
STRINGVIT_19s0015g00580.t012e-39(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6044436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.22e-39nuclear factor Y, subunit B6